The second cycle of studies consists of following a Postgraduate Studies Program (PSP) which concludes with the award of a Postgraduate Diploma (MDS).

The postgraduate programs are part of the strategic planning of the Foundation, aim to promote knowledge, develop research and meet the educational, research and development needs of the country, are governed by scientific coherence, refer to specialties related to the scientific fields of the undergraduate study programs and meet conditions that guarantee a high level of studies.

There are 15 postgraduate programs operating at Panteion, which are organized by the Departments of the Institution.

There is also an Interdepartmental Master's Degree Program "Gender, Society, Politics" . The Departments of Public Administration, International & European Studies, Communication, Media and Culture, Sociology, Social Anthropology and Social Policy of Panteion University collaborate for its implementation.

“MA in Digital Transformation: e-Diplomacy, e-Campaigning and Digital Law (#Digi-DCL)“ . The language of instruction, examinations, assignments and any other activity related to the MA in Digital Transformation is English. The Departments of Communication, Media and Culture, and International and European Studies collaborate for its implementation.